Wednesday, May 7, 2008

Recurrent laryngeal nerve

I got baited into another long, fruitless debate with some gentlemen, but in the process, I learned some cool stuff about biology.

The recurrent laryngeal nerve is a nerve that runs from our brain to our voicebox to provide motor function and sensation to the voicebox. Interestingly, though, instead of running a direct route from brain to larynx, it runs from the brain, all the way down the neck to the chest, and then back up the larynx. It doesn't take the straight path -- it loops. Hence, recurrent. This occurs in a whole bunch of animals, including the giraffe -- where "taking the long road" adds meters of nerve.

One gentleman in particular used this as evidence of common descent -- after all, why would the nerve take this inefficient path from the brain down to the chest and back up to the larynx in animals as diverse as men and giraffes, unless the two species were related? Having never heard of this before, and finding it interesting, I googled "laryngeal nerve," to learn what it was. On a whim, I then looked up "non-recurrent laryngeal nerve" and I found this abstract, among others, which indicated that non-recurrent laryngeal nerves occur about 1% of the time in humans.

I brought this to the attention of the gentleman, and pointed out that given the regular occurrence of non-recurrent laryngeal nerves, it would seen that if such a path were advantageous, it would have been selected by now. Thus, the fact that the other variant is set (or nearly set) in the population indicates that the recurrent version may well have some advantage. There was also another abstract which indicated that the non-recurrent variant was quite deletarious during surgery, as it increased the chance of injury. That at least provided a potential explanation.

He never responded. I wish he had. He obviously knew some stuff about biology. He obviously had a lot to teach me.

Sunday, May 4, 2008

Intelligence

Got into an interesting discussion with someone about the definition of "intelligence." As I understood him, he seemed to think that our concept of "intelligence" was something of an illusion, because animals (and, presumably we also) simply follow the laws of nature as applied through the genetic preprogramming we bring to the table and the stimuli we experience. Thus, he argued, there was no fundamental difference between the behavior of animals and the the behavior of the weather, except for the degree of complexity in the system.

Not wanting to get into an argument about free-will/determination, compatibilism/incompatibilism, or materialism/dualism, I argued that even if we are simply highly complex systems, we are fundamentally different than the weather, because we have the capacity to act with respect to preexisting desires. We don't just act in response to stimuli -- we interpret those stimuli with respect to desired outcomes (e.g. survival, happiness, reproduction, spiritual fulfilment) -- all things which the weather cannot do. In other words, we don't just see a hamburger -- we see the hamburger with respect to our own desire to eat, or our own desire not to die of heart disease, and act according to our desires.

The weather does not have preprogrammed ends or desires. We do. And that's what makes us intelligent.

Seems like there are three ways to view intelligence:

1) Illusion, as what appears to be intelligence is merely the systematic function of a highly complex system -- a system that reacts with 100% predictability based on genetic preprogramming and physical stimuli.

2) An external, spiritual "soul" that exists independently of the body.

3) The sum of an organisms desires, thoughts, memories, and plans that we bring to our physical stimuli. Whether or not these are purely material or an ethereal "soul," they are what makes us intelligent.

Sunday, April 27, 2008

Kant

“The empiricist will never allow himself to accept any epoch of nature for the first–the absolutely primal state; he will not believe that there can be limits to his outlook into her wide domains, nor pass from the objects of nature, which he can satisfactorily explain by means of observation and mathematical thought–which he can
determine synthetically in intuition, to those which neither sense nor imagination can ever present in concreto; he will not concede the existence of a faculty in nature, operating independently of the laws of nature–a concession which would introduce uncertainty into the procedure of the understanding, which is guided by necessary laws to the observation of phenomena; nor, finally, will he permit himself to seek a cause beyond nature, inasmuch as we know nothing but it, and from it alone receive an objective basis for all our conceptions and instruction in the unvarying laws of things.

In truth, if the empirical philosopher had no other purpose in the establishment of his antithesis than to check the presumption of a reason which mistakes its true destination, which boasts of its insight and its knowledge, just where all insight and knowledge cease to exist, and regards that which is valid only in relation to a practical interest, as an advancement of the speculative interests of the mind (in order, when it is convenient for itself, to break the thread of our physical investigations, and, under pretence of extending our cognition, connect them with transcendental ideas, by
means of which we really know only that we know nothing)–if, I say, the empiricist rested satisfied with this benefit, the principle advanced by him would be a maxim recommending moderation in the pretensions of reason and modesty in its affirmations, and at the same time would direct us to the right mode of extending the province of the understanding, by the help of the only true teacher, experience.

In obedience to this advice, intellectual hypotheses and faith would not be called in aid of our practical interests; nor should we introduce them under the pompous titles of science and insight. For speculative cognition cannot find an objective basis any other where than in experience; and, when we overstep its limits our synthesis, which requires ever new cognitions independent of experience, has no substratum of intuition upon which to build.

But if–as often happens–empiricism, in relation to ideas,
becomes itself dogmatic and boldly denies that which is above the sphere of its phenomenal cognition, it falls itself into the error of intemperance–an error which is here all the more reprehensible, as thereby the practical interest of reason receives an irreparable injury.

And this constitutes the opposition between Epicureanism and Platonism.”

Videos

Broke down and started a youtube account. Here are a couple old videos.

Skiing, Durango CO:



Whale breaching off the coast of Alaska:



Scabs running around in the Albuquerque snow:



The Silverton railroad, Colorado:

Saturday, April 26, 2008

The eye

Another video reflecting profound ignorance:



Here are the errors:

1) Non-sequitor. Titling the video "creationism disproved?" As though the presentation of a hypothesis of the evolution of one organ, the eye, could disprove the idea that the organism itself was created. Silly, if course.

2) Oversimplification. The video starts out with "light sensitive cells," as though the development of such cells was "no big deal." But let's take a closer look at this. How much genetic information is required to transform a limited number of cells into light sensitive cells? First, the cell has to hyperpolarize in light. Then, it has to have the capacity to produce various neurotransmitters depending on its state of polarization, and transmit them. And it has to be connected via nervous tissue which can transfer that neurotransmitters. And it has to have some capacity to receive the neurotransmitters. And it has to have the capacity to use this information in a way that adds survival value. All this irreducibly complex functionality, glossed over in just the "first step." All the further steps similarly oversimplify the steps of development. Like all the genetic information required to construct the "rudimentary lens," including the differentiation of lens cells, and the mechanisms required to manipulate those cells in order to make the lens useful. She skipped those steps, too. Finally, by focusing only on mollusks, she doesn't even get to the real difficult stuff -- the development of the eye BALL, which moves freely inside an eye socket.

3) Hypothesis masqueraded as science. All they have presented is a hypothesis -- not a theory -- there is in fact no evidence to prove that these various forms of eyes actually, historically, evolved from one another. The evolution of the eye could have been radically different than the process presented here. Or there could have been no such evolution at all. There is no evidence to falsify either of these other possibilities, and therefore the "just-so" story presented is not science.

4) Non-sequitur. I think my favorite quote of hers is "If it can grow, it can evolve." How beautiful is that. Growth is the process by which an organism follows the instructions encoded as genetic information preprogrammed into the organism. Evolution is the process by which genetic information is modified through the generations. Radically different processes. But she argues that if an organism can follow its preprogrammed genetic instructions, then surely those genetic instructions could be programmed into the organism without any intelligent intervention. Nice:). Like if a computer can start up, following the instructions pre-ncoded in its hardware and software, then surely those instructions can develop through random variation and non-random selection.

Mind and reality.

Seems to me there exists a spectrum of philosophical belief regarding the relationship between mind and reality. On the one extreme you have solipsists who believe the mind manufactures reality. On the other extreme you have materialistic reductionists who want to reduce every feeling and thought to a chemical configuration, and ultimately to equate the mind with the physical brain. In the middle there are those (like me) who believe that the mind and reality both exist, but in different categories -- mind being a subjective experience, and reality being objective.

Concepts that fit into the category of subjective experience:

Pain. It has no physical reality. Yet we experience it. We know what it is. We know what to do when we feel it. Its causes and effects can be observed in the objective world -- a slap in the face, or a brain-scan at the time the pain is initiated to see which portions of the brain are lit up. But you can't ever point to "pain."

Similarly, the mind is a subjective experience. It has no physical reality. Yet we experience it. We all know what it's like when our "mind" is "groggy." We all know what it's like when a new idea flashes into our mind. We speak of these things are real -- and they are -- albeit not physically real.

Philosophically, and experientially, we treat these subjective experiences as real. And rightly so. We experienced ideas long before we had any idea of how the brain actually functions. In fact, today, we still don't know what the physical manifestations or causes of an "idea" are. Yet we have them from the earliest age.

Materialists would like to reduce those experiences to mere chemical components. How many times have I read articles about how "love" has been proven by "science" to be "dopamine." But when you read the article, you discover that the basis for this conclusion is only that dopamine is associated with love. But dopamine is also associated with all good feelings -- it's a feel-good drug. It explains why one feels high, but it does not select why one loves one person or another -- or how that love is reflected in the physical reality of the brain. It basically reduces love to "feeling good" -- which is, of course, nonsense to anyone who has ever experienced love.

We experience love, mind, and pain as real, not as their physical manifestations. There's no sense denying what we all experience, every day.

And the mind, while subjective, also has the power to directly impact reality. The placebo effect is real, and it is documented. People act and manipulate objective reality based on these IDEAS, FEELINGS, HOPES, CHOICES, and DREAMS, which, although we cannot see, touch, or measure them, are nevertheless very real to us in our experience.

Then on the other hand, there are the dualists who insist that the mind has some substantive reality. Like the mind isn't just an experience, but "something" that could conceivably be found "somewhere." They do this without any evidence. And a substantial argument to the contrary: the fact that you can fiddle with someone's mind by fiddling with the physical components of their brain.

The key is to keep categories separate. Treat the subjective as real, and subjective. Treat the objective as real, and objective. Don't treat the subjective as objective. Don't treat the objective as subjective. Everything in its right place.